rs6302804 SNP Detail

Summary

• ID
  rs6302804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45317084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATTCAC AGGACTGTGG
  TAAGAAGGGA GCCAGGCCGG GCTCCTTAGG AACACGGCGG GGAGACATGA CTGCCCCATG
  AGAATGTAAG CTGTCACGGT GCTATCCACA GGGCCTTGCA GGAAGCTCTG GAGGCTAAGG
  GACTTGGAAG TCCCCATCCC GACCCAGGAC CCCTATCTAT ACTTCCCATG TGCCCTTCAC
  Y
  GAGAGTGCAT CTTGAAATTC TCACTTCCTC ATCTCACTCC CAGCTGCGGC TTCCCCGGCT
  GATGGAAGAA TACTGTTGCT GCCCATCCCA GCCCTGCTCT CTGGAAATTT CCTCTGGGAG
  GGGCTGGAGA CCTCAGGCAG CTCCTCCCTG CCTCTGGCTC CCCCCATACC TCCCCTTGCC
  TGGGTCAGCA AGAGCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8708734	WI_WGS_9_45661183	WI	MOUSE	f	SNP							C		T
ss52013342	NES15030276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6302804					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013342	NES15030276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45317084 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	356 bp distal
Rr677906	regulatory region 677906	within coordinates
Tssr84790	transcription start site region 84790	149 bp upstream
Tssr84791	transcription start site region 84791	280 bp upstream
Tssr84792	transcription start site region 84792	328 bp upstream
Tssr84793	transcription start site region 84793	1333 bp upstream