rs6303056 SNP Detail

Summary

• ID
  rs6303056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85386865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGATGAA GGCTGAAGGC
  TCAGAGTCAA GTTCAACTTA CATCAGACAA TTCAAGGCCA GCCTGAGCTA CATGCTGTCC
  AGTTTCAAAA GGCTGGAGGA GGAGGAGGAG GAAGAAGAAG AAGATAGGGA GAGGAGGAGA
  GGAGAAACAA GGAGAAGAGG AAGAGAGGAT AGTCTGGGAG AGGAAAGGGG AGCAATAAGG
  R
  CCCCCCTTCT TCTAATCTCA CCTCCAGCCC CTAATTTGCT GCCTCCAGGC CCAGTGCCTC
  TTTCCCCTTC TCACACCCCT TCTCCAGGCT GCCAGGGTAG ATCCCGGCAC AGGAAACCAT
  GGTATCCAAA ACACTGGCTG GTCCCCAGTC CAGCTCTGAG TTCTTGGTGT CCTGAAGCCT
  TCAGCTTCCT TTGGTCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8708986	WI_WGS_6_86311784	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6303056					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85386865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	441 bp distal
Rr633210	regulatory region 633210	175 bp distal
Rr633211	regulatory region 633211	522 bp proximal
Rr633212	regulatory region 633212	984 bp proximal
Rr633213	regulatory region 633213	1133 bp proximal
Rr633214	regulatory region 633214	1311 bp proximal