rs6303316 SNP Detail

Summary

• ID
  rs6303316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45317161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGAATGT AAGCTGTCAC
  GGTGCTATCC ACAGGGCCTT GCAGGAAGCT CTGGAGGCTA AGGGACTTGG AAGTCCCCAT
  CCCGACCCAG GACCCCTATC TATACTTCCC ATGTGCCCTT CACCGAGAGT GCATCTTGAA
  ATTCTCACTT CCTCATCTCA CTCCCAGCTG CGGCTTCCCC GGCTGATGGA AGAATACTGT
  Y
  GCTGCCCATC CCAGCCCTGC TCTCTGGAAA TTTCCTCTGG GAGGGGCTGG AGACCTCAGG
  CAGCTCCTCC CTGCCTCTGG CTCCCCCCAT ACCTCCCCTT GCCTGGGTCA GCAAGAGCCC
  CTCTGGGGAC ACTCAGCCTT TCTTGTGACT GGGGTAAATA TTACCTGACA CTGTTAATAT
  TTAATGCCCC CCCACCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8709247	WI_WGS_9_45661260	WI	MOUSE	f	SNP			T	C
ss46359311	mCV25164000	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6303316					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45317161 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	433 bp distal
Rr677906	regulatory region 677906	within coordinates
Tssr84790	transcription start site region 84790	72 bp upstream
Tssr84791	transcription start site region 84791	203 bp upstream
Tssr84792	transcription start site region 84792	251 bp upstream
Tssr84793	transcription start site region 84793	1256 bp upstream