rs6303568 SNP Detail

Summary

• ID
  rs6303568
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143927673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCATTCT TCTGACTGAG
  AATCACGTAC AGCTCCCGCT GGTCAGACTT CTTCCCAACA ACCCAGTAGT CGCTCATGGC
  CTTCACAATG ATTTCTTCAT CTTCATCTGC TCTGTAACAA AGTTTCAGAG TGGGATGCTT
  TTATGTACAC AGCTAGACTG GGAAGAGAAA AAGAATTCAA AACAAGAAAT GGTACTAAGG
  K
  GCTGGAGAGA TGGCTCAGTG GTTAAGAGCA CTGACTGCTC TTCCGAAGGT ACTGAGTTCA
  ATTCTCAGCA ACCACATGGT GGCTCACAAC CATCTGTAAT GAGATCTGAC GCCCTCTTCT
  GGAGTGTCTG AAGACAGCTA CAGTGTACTT ACATATAACA ATAAATAAAT CTTAGGGCTG
  GAGCAAGCAG AAGCCAAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8709501	WI_WGS_5_143070880	WI	MOUSE	f	SNP	T			G
ss45779259	mCV25192111	ABI	CRAMUS_MOUSE	f	SNP		T	G		G
ss144605807	ENSMUSSNP6599048	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
ss321708903	CHEV_5_144751724	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6303568					SNP	T	T	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143927673 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Rr624320	regulatory region 624320	1478 bp distal
Tssr54387	transcription start site region 54387	1752 bp downstream
Tssr54388	transcription start site region 54388	1776 bp downstream
Tssr54389	transcription start site region 54389	1855 bp downstream