rs6303665 SNP Detail

Summary

• ID
  rs6303665
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86763077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCAACTGCAG
  GATGCTCGGG GATCGCCGCG GGCGTGGGCC TGGGGAGAGG GAGGGCTGTG AAGGCCGAGG
  CAAGGGCGGC AGCGTGCGCT GCCAACAGAG CCCAGCCNCT TCTCCTAAGA AGCGTGCCTG
  TGACTAGCTG GCCTGTCCTC GGCAGTAGAG GCCCAGATGG GCAGGGCGAT TTGAAATGTC
  AGATTCTGTG GCCACGCGAC CGTTACCTGT GCACCCTCAG CTCCTTGAGG CTGCTCCACT
  W
  GTCTCAGTTA CAACGGGGAG CCGAGTGGGC AGGTAATTCG AGCCGCTTTA GCCTTAAAGC
  AATACTGAGG TATGCGGTAT AGACAAGTAG CAAAGCAATT AGCTGAATGC CAGATTACAC
  TCGTCTTGTA ATCATTTGCA CCCTTAAACT GTAATTTTTG CCATTTAAAT ATGTCGGAAC
  GTCTTATATT ATTTGAATGT CGAGTGTTAT TTGCATGGGA TTGGAGTCGG TTAATAATTT
  CATGAGTTGA                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8709598	WI_WGS_9_87825720	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6303665					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86763077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	621 bp distal
Rr684154	regulatory region 684154	85 bp distal
Snap91	synaptosomal-associated protein 91	370 bp upstream
Tssr90794	transcription start site region 90794	652 bp upstream
Tssr90795	transcription start site region 90795	612 bp upstream
Tssr90796	transcription start site region 90796	557 bp upstream
Tssr90797	transcription start site region 90797	540 bp upstream
Tssr90798	transcription start site region 90798	522 bp upstream
Tssr90799	transcription start site region 90799	365 bp upstream
Tssr90800	transcription start site region 90800	312 bp upstream