rs6304442 SNP Detail

Summary

• ID
  rs6304442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45317388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTTCCT CTGGGAGGGG
  CTGGAGACCT CAGGCAGCTC CTCCCTGCCT CTGGCTCCCC CCATACCTCC CCTTGCCTGG
  GTCAGCAAGA GCCCCTCTGG GGACACTCAG CCTTTCTTGT GACTGGGGTA AATATTACCT
  GACACTGTTA ATATTTAATG CCCCCCCACC TCTGCCCTGG CCACGGCAGA CACTGTCCCC
  R
  TAGTAGAGGC CACAGGAAGA CCGTCGTGGA GAAGCCCCGA TGGCTGGGGA AATATCAGAT
  CTGTCAGCGA ACAGTGGTGA GACTGGCAGG ACTCTGCCTG GGACTGGCTC TGGTGGGCAG
  CTAGACCCCT TCCCTCTCCT GTTCCTTGGA GTTCCCCAGC CAGTGGCTCT CTTAGAAAAT
  TAGCATTCAG AAGGGATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8710375	WI_WGS_9_45661487	WI	MOUSE	f	SNP							A		G
ss52013339	NES15030279	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A		G		A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6304442					SNP	G	A	A	A	A	A	A	G	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013339	NES15030279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45317388 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	660 bp distal
Rr677906	regulatory region 677906	within coordinates
Tssr84790	transcription start site region 84790	81 bp downstream
Tssr84791	transcription start site region 84791	within coordinates
Tssr84792	transcription start site region 84792	24 bp upstream
Tssr84793	transcription start site region 84793	1029 bp upstream