rs6304518 SNP Detail

Summary

• ID
  rs6304518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78238631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTTCAA TTTGTTTTGC
  ATCCAAGGGA GGCTTTCTCT GGCTGCCAGG ATGTAGGAAC TTCTTCACAT TGGGGAGGCT
  GCTGATTCTG CTCTTGAAGG CCTGTGAACC AGAAACCACA ACTTGACCAT TGGTAGTAGG
  CATGTGCACG ACCCAGGGAT TTGAGCCCCT CCCAGAACAT CATCAACTGC ATCCTTGCAA
  Y
  AGCTCCAGTG TCAGCATGAG ATGCATGAAA AACCATGAGC CTGAAGCAGA GCTCAGCATC
  ATATGTCTTC AGAGCTCCTT TGACATCCAG TTACCATCTC CTCTAGACAT GCCCTGTAGA
  TCTGCCTCTG TGGCGATGTC TCTCAGGTGT GAATGAGATA GAAGGAAAGA GAAAGGAAGA
  CATGAAAAAC TGATGTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8710451	WI_WGS_9_79095613	WI	MOUSE	f	SNP							T		C
ss61427567	NES16811989	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6304518					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427567	NES16811989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78238631 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Omt2b	oocyte maturation, beta	1729 bp downstream
Tssr2946	transcription start site region 2946	1956 bp upstream