rs6305082 SNP Detail

Summary

• ID
  rs6305082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78238766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCTGCTCTT
  GAAGGCCTGT GAACCAGAAA CCACAACTTG ACCATTGGTA GTAGGCATGT GCANGACCCA
  GGGATTTGAG CCCCTCCCAG AACATCATCA ACTGCATCCT TGCAANAGCT CCAGTGTCAG
  CATGAGATGC ATGAAAAACC ATGAGCCTGA AGCAGAGCTC AGCATCATAT GTCTTCAGAG
  CTCCTTTGAC ATCCAGTTAC CATCTCCTCT AGACATGCCC TGTAGATCTG CCTCTGTGGC
  R
  NTGTCTCTCA GGTGTGAATG AGANAGAAGG AAAGAGAAAG GAAGACATGA AAAACTGATG
  TGCTAATGGA GACAGGAATG TCCAAGGCTA ACCAGAAGCA ACTCAGCCAG TTTTCACATT
  GGGAGACAGA GATGGGGTGA TGGAGGTGGA GCTGGGGACA GCATGAGGAA GACTGGAGAA
  GAAAGCAGGC TACAGAGAGC AGGAGACAGA GCTGAGGGAA GGGCCTGCAC AGACAGAGCA
  TGACAGAGGC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711017	WI_WGS_9_79095748	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305082					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78238766 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Omt2b	oocyte maturation, beta	1864 bp downstream
Tssr2946	transcription start site region 2946	1821 bp upstream