rs6305466 SNP Detail

Summary

• ID
  rs6305466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101122325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTGGAAA TCCCCGCCCC
  GGCCGCCCTG GCCGCTCGGC CGCCCGGCTC CGCGCCCCTC TCACGGTCCC CGAGCTGGCC
  ACGGCGGTCT CCACCTCCCC ACCGGGACAC TCACCACTTC CGTGTGCGCC GGGCCGCGCG
  GCTCCTTGGC GCAGGGTCGA TCTGGGTCAG GAGTCTGGCA GGCAACTCAG CCTGCCGTGC
  R
  GGGTCCGGCG TGGACACCCG CGGCTAAGGA GAGGCACCGA AAGGACGAGC GAGGCTGGGC
  GCGGACCCCG CGGCGCGTCA GCGGCTGCCG GCTACTCCGC GGCTGCGGCG GCCTGCGCTC
  TAAAAACGCA CCGGCGCCCC GCCCCTCCAA CTCTGAACGA TCACGCCCCT TGTACGGCCC
  AGCCCCCGTG ACGTCAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711405	WI_WGS_4_99031467	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305466					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101122325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14497	CpG island 14497	within coordinates
Jak1	Janus kinase 1	within coordinates
Rr99637	regulatory region 99637	within coordinates
Tssr42547	transcription start site region 42547	250 bp upstream
Tssr42548	transcription start site region 42548	86 bp downstream
Tssr42549	transcription start site region 42549	108 bp downstream