rs6305481 SNP Detail

Summary

• ID
  rs6305481
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101122337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TAGCGGAGCG
  GCCCTCCCTC GCCTCCCGGC AGCCCCGCCG CCTGGAAATc cccgccccgg ccgccctggc
  cgctcggccg cccggctccg cgccccTCTC ACGGTCCCCG AGCTGGCCAC GGCGGTCTCC
  ACCTCCCCAC CGGGACACTC ACCACTTCCG TGTGCGCCGG GCCGCGCGGC TCCTTGGCGC
  AGGGTCGATC TGGGTCAGGA GTCTGGCAGG CAACTCAGCC TGCCGTGCNG GGTCCGGCGT
  K
  GACACCCGCG GCTAAGGAGA GGCACCGAAA GGACGAGCGA GGCTGGGCGC GGACCCCGCG
  GCGCGTCAGC GGCTGCCGGC TACTCCGCGG CTGCGGCGGC CTGCGCTCTA AAAACGCACC
  GGCGCCCCGC CCCTCCAACT CTGAACGATC ACGCCCCTTG TACGGCCCAG CCCCCGTGAC
  GTCAGAAGCT GCTCCTACAA TTGGACAGAG CCAAGACCCA AGACTGAGGA CCTTGGAGTC
  CCCGCCTGCC                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711420	WI_WGS_4_99031479	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305481					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101122337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14497	CpG island 14497	within coordinates
Jak1	Janus kinase 1	within coordinates
Rr99637	regulatory region 99637	within coordinates
Tssr42547	transcription start site region 42547	262 bp upstream
Tssr42548	transcription start site region 42548	74 bp downstream
Tssr42549	transcription start site region 42549	96 bp downstream