rs6305502 SNP Detail

Summary

• ID
  rs6305502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45317585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATAGTAG AGGCCACAGG
  AAGACCGTCG TGGAGAAGCC CCGATGGCTG GGGAAATATC AGATCTGTCA GCGAACAGTG
  GTGAGACTGG CAGGACTCTG CCTGGGACTG GCTCTGGTGG GCAGCTAGAC CCCTTCCCTC
  TCCTGTTCCT TGGAGTTCCC CAGCCAGTGG CTCTCTTAGA AAATTAGCAT TCAGAAGGGA
  Y
  CCTCAACCCC ACCCCCACAG AAAAAGAGCA GAATAGCAGA AGTTGGAGCA TCAGAAGTGT
  GTGTGTTTAT GTGTGTTGTG TGTTTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTACGTG
  TGTGTGTACA TGTGACTTTG TTCTGGGTGA CAGGGTGTTG TTCTGTAGCC CAGGTTGGCC
  TGGAACTCAT ATAGCCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711441	WI_WGS_9_45661684	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305502					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45317585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21691	CpG island 21691	1849 bp proximal
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	857 bp distal
Rr677906	regulatory region 677906	89 bp distal
Rr677907	regulatory region 677907	1920 bp proximal
Tssr84790	transcription start site region 84790	278 bp downstream
Tssr84791	transcription start site region 84791	178 bp downstream
Tssr84792	transcription start site region 84792	169 bp downstream
Tssr84793	transcription start site region 84793	832 bp upstream
Tssr84794	transcription start site region 84794	1981 bp upstream