rs6305734 SNP Detail

Summary

• ID
  rs6305734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATACAGA CTCCCAGTTT
  GCAGTGTAAC TGTGCAAGTC CTGTTGATAA CAAGAATCAC AGCAAGCTTA AATCATGCCA
  GTGGGCTTCT TATCATTGAG AAGTCATATA GTTTGAGGTC AAGTACACCC AAGCATATAC
  CCATCATTGT GGTCATCTAC CTACCACTTG GCAACCTGAA GCACACTGAG CCAGGCCTCG
  R
  CTTTGTTGCC ACTAAGGAGA TTATCTAGGG TGGAGCCTGC CTCCCTAGAT CACTCTATTG
  TTCAGCCTCT GTTGCTGCTG CTACCTGCTG GGAATCGGCC TAGCTGTTCT GGAGTCTACA
  TCTGATCCTA CACGTGGTCA CCTGCAGCTG GGCTCCAAGG ATGATTTGGC GGGAATGGGC
  TTCCCCCCTC TATTATAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8711675	WI_WGS_13_5552131	WI	MOUSE	f	SNP	A	G
ss324223049	CHEV_13_5721865	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6305734					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772618 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	1232 bp upstream
Rr474521	regulatory region 474521	869 bp proximal
Rr474522	regulatory region 474522	1803 bp proximal
Tssr121308	transcription start site region 121308	1820 bp downstream