rs6305835 SNP Detail

Summary

• ID
  rs6305835
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATCATG CCAGTGGGCT
  TCTTATCATT GAGAAGTCAT ATAGTTTGAG GTCAAGTACA CCCAAGCATA TACCCATCAT
  TGTGGTCATC TACCTACCAC TTGGCAACCT GAAGCACACT GAGCCAGGCC TCGACTTTGT
  TGCCACTAAG GAGATTATCT AGGGTGGAGC CTGCCTCCCT AGATCACTCT ATTGTTCAGC
  M
  TCTGTTGCTG CTGCTACCTG CTGGGAATCG GCCTAGCTGT TCTGGAGTCT ACATCTGATC
  CTACACGTGG TCACCTGCAG CTGGGCTCCA AGGATGATTT GGCGGGAATG GGCTTCCCCC
  CTCTATTATA AAGCGTGTCC ACCATTAAAA ATTTGAGCCT TGATCAGAAT TCTGTCTTGG
  TTCCATCTCT CTCTCGTCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8711777	WI_WGS_13_5552198	WI	MOUSE	f	SNP	C	A
ss324223050	CHEV_13_5721932	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6305835					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772685 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	1165 bp upstream
Rr474521	regulatory region 474521	802 bp proximal
Rr474522	regulatory region 474522	1736 bp proximal
Tssr121308	transcription start site region 121308	1753 bp downstream