rs6305968 SNP Detail

Summary

• ID
  rs6305968
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45317669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAAGCCCCGA
  TGGCTGGGGA AATATCAGAT CTGTCAGCGA ACAGTGGTGA GACTGGCAGG ACTCTGCCTG
  GGACTGGCTC TGGTGGGCAG CTAGACCCCT TCCCTCTCCT GTTCCTTGGA GTTCCCCAGC
  CAGTGGCTCT CTTAGAAAAT TAGCATTCAG AAGGGANCCT CAACCCCACC CCCACAGAAA
  AAGAGCAGAA TAGCAGAAGT TGGAGCATCA GAAgtgtgtg tgtttatgtg tgttgtgtgt
  K
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tacgtgtgtg tgtACATGTG ACtttgttct
  gggtgacagg gtgttgttct gtagcccagg ttggcctgga actcatatag cccagaataa
  cctaaaattc actgcattct tcctgcctca gccttccacg ccctgCCCAG TGTGACTTTC
  TCATCTTGGA TGGAGAACTA AGATTTCAAA GTGGTCAGGG GCTGCCGGGG TTGGAGATGG
  GAGGAGCAGC                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711911	WI_WGS_9_45661768	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305968					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45317669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21691	CpG island 21691	1765 bp proximal
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	941 bp distal
Rr677906	regulatory region 677906	173 bp distal
Rr677907	regulatory region 677907	1836 bp proximal
Tssr84790	transcription start site region 84790	362 bp downstream
Tssr84791	transcription start site region 84791	262 bp downstream
Tssr84792	transcription start site region 84792	253 bp downstream
Tssr84793	transcription start site region 84793	748 bp upstream
Tssr84794	transcription start site region 84794	1897 bp upstream