rs6306095 SNP Detail

Summary

• ID
  rs6306095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGGGAC TTATCTGCAA
  TGAAAGGTAT TGAGGTTTGT GGGTTCATTT CTTTCAGTAC TGGGGACAAG ACTTAACTAG
  GAATGCCAGA GCTAAGTCCT CACCCTCTTC CCCCTTTGAA ATATAAGGGA ACACCTGCAG
  GGCCAACTGT CACCAATATC TAGGGCTTAA TATTCCTCAA GATCTGAATG GCCTTTCTCA
  Y
  TAAAACAAGA TATCCCACCA GCTAAATGTA TTGATAAATG CAAATTCAGG ATTTCCAGGC
  AGATACCTGG AGCCTGTGGA ATGGAAGCAT TGGCAGGCTA ATTGAGATGA GCTCTAATTG
  TCTCTAGTTA CCTTTTGAGG AGTCGTCACC CAGAGCAATA GCTGTCCCCT TAGGTGTGAT
  GGGTCTCTCC CAGCGCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8712038	WI_WGS_5_29709814	WI	MOUSE	f	SNP								T		C
ss45742497	mCV22340603	ABI	CRAMUS_MOUSE	f	SNP	C	C	T								T
ss47667762	NES10247014	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C		T	T	T	C	T	T	C
ss148191032	ENSMUSSNP6703950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6306095					SNP	C	C	T	C	T	C	T	T	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667762	NES10247014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204842 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1142 bp upstream
Cpgi15696	CpG island 15696	237 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1222 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	956 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1129 bp upstream
Tssr45659	transcription start site region 45659	1531 bp upstream
Tssr50520	transcription start site region 50520	360 bp downstream
Tssr50521	transcription start site region 50521	381 bp downstream
Tssr50522	transcription start site region 50522	500 bp downstream
Tssr50523	transcription start site region 50523	516 bp downstream
Tssr50524	transcription start site region 50524	738 bp downstream