rs6306131 SNP Detail

Summary

• ID
  rs6306131
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATTGAG GTTTGTGGGT
  TCATTTCTTT CAGTACTGGG GACAAGACTT AACTAGGAAT GCCAGAGCTA AGTCCTCACC
  CTCTTCCCCC TTTGAAATAT AAGGGAACAC CTGCAGGGCC AACTGTCACC AATATCTAGG
  GCTTAATATT CCTCAAGATC TGAATGGCCT TTCTCATTAA AACAAGATAT CCCACCAGCT
  W
  AATGTATTGA TAAATGCAAA TTCAGGATTT CCAGGCAGAT ACCTGGAGCC TGTGGAATGG
  AAGCATTGGC AGGCTAATTG AGATGAGCTC TAATTGTCTC TAGTTACCTT TTGAGGAGTC
  GTCACCCAGA GCAATAGCTG TCCCCTTAGG TGTGATGGGT CTCTCCCAGC GCCCTTCCAG
  TCAGACCTGC TGCTGTTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8712074	WI_WGS_5_29709838	WI	MOUSE	f	SNP							A		T
ss47667759	NES10247015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6306131					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667759	NES10247015	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204866 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1118 bp upstream
Cpgi15696	CpG island 15696	213 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1246 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	932 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1105 bp upstream
Tssr45659	transcription start site region 45659	1507 bp upstream
Tssr50520	transcription start site region 50520	336 bp downstream
Tssr50521	transcription start site region 50521	357 bp downstream
Tssr50522	transcription start site region 50522	476 bp downstream
Tssr50523	transcription start site region 50523	492 bp downstream
Tssr50524	transcription start site region 50524	714 bp downstream