rs6306229 SNP Detail

Summary

• ID
  rs6306229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGCCAG AGCTAAGTCC
  TCACCCTCTT CCCCCTTTGA AATATAAGGG AACACCTGCA GGGCCAACTG TCACCAATAT
  CTAGGGCTTA ATATTCCTCA AGATCTGAAT GGCCTTTCTC ATTAAAACAA GATATCCCAC
  CAGCTAAATG TATTGATAAA TGCAAATTCA GGATTTCCAG GCAGATACCT GGAGCCTGTG
  R
  AATGGAAGCA TTGGCAGGCT AATTGAGATG AGCTCTAATT GTCTCTAGTT ACCTTTTGAG
  GAGTCGTCAC CCAGAGCAAT AGCTGTCCCC TTAGGTGTGA TGGGTCTCTC CCAGCGCCCT
  TCCAGTCAGA CCTGCTGCTG TTCTGCTTGC CTTGCGTCGG TGGTTCGGCC AGGGCTACCA
  AAGTTCCTAC GTTCTTTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712172	WI_WGS_5_29709893	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306229					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204921 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1063 bp upstream
Cpgi15696	CpG island 15696	158 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1301 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	877 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1050 bp upstream
Tssr45659	transcription start site region 45659	1452 bp upstream
Tssr50520	transcription start site region 50520	281 bp downstream
Tssr50521	transcription start site region 50521	302 bp downstream
Tssr50522	transcription start site region 50522	421 bp downstream
Tssr50523	transcription start site region 50523	437 bp downstream
Tssr50524	transcription start site region 50524	659 bp downstream