rs6306231 SNP Detail

Summary

• ID
  rs6306231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCAGAGC TAAGTCCTCA
  CCCTCTTCCC CCTTTGAAAT ATAAGGGAAC ACCTGCAGGG CCAACTGTCA CCAATATCTA
  GGGCTTAATA TTCCTCAAGA TCTGAATGGC CTTTCTCATT AAAACAAGAT ATCCCACCAG
  CTAAATGTAT TGATAAATGC AAATTCAGGA TTTCCAGGCA GATACCTGGA GCCTGTGGAA
  W
  GGAAGCATTG GCAGGCTAAT TGAGATGAGC TCTAATTGTC TCTAGTTACC TTTTGAGGAG
  TCGTCACCCA GAGCAATAGC TGTCCCCTTA GGTGTGATGG GTCTCTCCCA GCGCCCTTCC
  AGTCAGACCT GCTGCTGTTC TGCTTGCCTT GCGTCGGTGG TTCGGCCAGG GCTACCAAAG
  TTCCTACGTT CTTTCCGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712174	WI_WGS_5_29709896	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306231					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204924 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1060 bp upstream
Cpgi15696	CpG island 15696	155 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1304 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	874 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1047 bp upstream
Tssr45659	transcription start site region 45659	1449 bp upstream
Tssr50520	transcription start site region 50520	278 bp downstream
Tssr50521	transcription start site region 50521	299 bp downstream
Tssr50522	transcription start site region 50522	418 bp downstream
Tssr50523	transcription start site region 50523	434 bp downstream
Tssr50524	transcription start site region 50524	656 bp downstream