rs6306235 SNP Detail

Summary

• ID
  rs6306235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGTCA TATAGTTTGA
  GGTCAAGTAC ACCCAAGCAT ATACCCATCA TTGTGGTCAT CTACCTACCA CTTGGCAACC
  TGAAGCACAC TGAGCCAGGC CTCGACTTTG TTGCCACTAA GGAGATTATC TAGGGTGGAG
  CCTGCCTCCC TAGATCACTC TATTGTTCAG CCTCTGTTGC TGCTGCTACC TGCTGGGAAT
  Y
  GGCCTAGCTG TTCTGGAGTC TACATCTGAT CCTACACGTG GTCACCTGCA GCTGGGCTCC
  AAGGATGATT TGGCGGGAAT GGGCTTCCCC CCTCTATTAT AAAGCGTGTC CACCATTAAA
  AATTTGAGCC TTGATCAGAA TTCTGTCTTG GTTCCATCTC TCTCTCGTCG CCTAGTTTCC
  CTCTTCTTTT TCAGCTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8712178	WI_WGS_13_5552227	WI	MOUSE	f	SNP	C	T
ss324223051	CHEV_13_5721961	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6306235					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772714 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	1136 bp upstream
Rr474521	regulatory region 474521	773 bp proximal
Rr474522	regulatory region 474522	1707 bp proximal
Tssr121308	transcription start site region 121308	1724 bp downstream