rs6306396 SNP Detail

Summary

• ID
  rs6306396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61417771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA GAAGAGATTT TAATTCACAT
  R
  GTGACTCCGC AGCCATTTAA TTATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8712341	WI_WGS_9_62071292	WI	MOUSE	f	SNP			A	G
ss46410882	mCV25244563	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		A
ss136539308	ENSMUSSNP2592918	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
ss322979024	CHEV_9_61358296	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6306396					SNP	G	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61417771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	574 bp distal
Rr680558	regulatory region 680558	756 bp distal
Rr680559	regulatory region 680559	within coordinates
Tssr85515	transcription start site region 85515	756 bp downstream