rs6306633 SNP Detail

Summary

• ID
  rs6306633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74695756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATCTTAT GGAGGTATTT
  TCACAACCAA GGTTCCCTCC ACTCAGATGA CCAGTTTAAG TAACTTAAAT AAAACTTTCC
  GGCCACAGAG TCTCCCTGTA TAGCCCAGGC TATCCTGGAA CTCACTATGT AGACCAGGGT
  GACTTGTCTC TGCCTACCAA GTGCCACTAT GCCCAATACT AATAATTTTT TAAACAAAGA
  R
  AACGCATCCT TTATATATTA AATTTTTCTT TTGTTGGTTG TTAAAATTTC GACGAATTGA
  CAATTGTGGT TCAGTCAAAC CCGTGCGGGA TGCTGGCCTT CAGGATTTTA AAATAGACTA
  GTGGAGGGAG AAAGGCAACA GGGACAGAAA AGAACAATGG TGTAGCAAAG GGAACTGGGG
  AGTGGGAGGA AGGTTGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712578	WI_WGS_5_73853458	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306633					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74695756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	214 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	354 bp upstream
Rr399136	regulatory region 399136	105 bp upstream
Rr613306	regulatory region 613306	within coordinates
Rr613307	regulatory region 613307	397 bp proximal
Tssr46674	transcription start site region 46674	371 bp upstream
Tssr46675	transcription start site region 46675	440 bp upstream
Tssr46676	transcription start site region 46676	546 bp upstream