rs6306748 SNP Detail

Summary

• ID
  rs6306748
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCGGGG CTCCTGAGCA
  GGCTCCCCGC CCACGACTTT CCCTAGGTGC ACGTGGAGGC TGGAGGTCTT TCTTGCGGTG
  CGATGAGGCC GCCGCACGGC AGAAGAGACT AGAAGATGAC CGCGGTAACG CTGGGTGCCC
  TTGCAGGGTC TTTCGGCAAA GATAGACCCC AGAACGCGAA CCAGGCTGGC CTACACACCC
  W
  ACGCCCCTAT GGCCTCTTCC AGTCCTCTGT CCTTGCCAGG GTCCGCAAGA CACTCCGCCT
  CCACAATAAC GGAGAGAGGG GGAAAAAAAT CCTTCACTTT CAGCCCCCTT GATTGTCTAG
  TGGGAGGTGC TGGAGAGATA GACCGTGTTG TGTCCTGAGG ACATTGTGAC AGTGGGAGGG
  ACTTCAAAAG CATAAATAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712693	WI_WGS_2_27729898	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306748					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11368	CpG island 11368			within coordinates
Rr553546	regulatory region 553546			353 bp distal
Rr553547	regulatory region 553547			563 bp distal
Rr553548	regulatory region 553548			within coordinates
Rr553549	regulatory region 553549			912 bp proximal
Tssr23213	transcription start site region 23213			840 bp upstream
Tssr23214	transcription start site region 23214			812 bp upstream
Tssr23215	transcription start site region 23215			762 bp upstream
Tssr23216	transcription start site region 23216			314 bp upstream
Vav2	vav 2 oncogene			mRNA-UTR
				Noncoding-Transcript-Variant