rs6306825 SNP Detail

Summary

• ID
  rs6306825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3310959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCAAACA AGAGTCAGCT
  AGGTGTGGGG TTAAAACTGC AGTGGTGGCT TTACAAAGAG CCAGACACCA CTGGGCACAA
  CCTCCATATG TGGCACAGGG CTTTTTCTCA AACCCCACTG CTCCTCCCAC TCCTCCACAT
  GAGGCATGTG CTTGACCACT GAGCCAGGAA AGCTCTTCAT GTTACAACTG GTGTACTTTT
  S
  TCAGTAAAAA ACAAAGCAGT GTGAGTCACA GCCTTAGGAG AGAAGCTCAC ATGTCTTTCA
  AACTTTGAAG CCAAACATTA AAATTTGGGT GTGATTTAGT TGATTCAGGC TTTTATAAAA
  ACTTAAATTG AATCAAGTTA AAAGACAGTC TTCTCATAAG CCATTTTTTT TTTTTGCCCA
  GTATTCCACT ATAATTCTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712770	WI_WGS_15_3107105	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306825					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3310959 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	within coordinates
Selenop	selenoprotein P	967 bp downstream
Tssr130406	transcription start site region 130406	1976 bp downstream
Tssr130407	transcription start site region 130407	1940 bp downstream
Tssr130408	transcription start site region 130408	1910 bp downstream
Tssr130409	transcription start site region 130409	1893 bp downstream
Tssr130410	transcription start site region 130410	1867 bp downstream
Tssr130411	transcription start site region 130411	1819 bp downstream
Tssr130412	transcription start site region 130412	1738 bp downstream
Tssr130413	transcription start site region 130413	1500 bp downstream
Tssr130414	transcription start site region 130414	1446 bp downstream
Tssr130415	transcription start site region 130415	1369 bp downstream
Tssr130416	transcription start site region 130416	1079 bp downstream
Tssr133567	transcription start site region 133567	1902 bp upstream
Tssr133568	transcription start site region 133568	1775 bp upstream