rs6306849 SNP Detail

Summary

• ID
  rs6306849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3310976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGTGTG GGGTTAAAAC
  TGCAGTGGTG GCTTTACAAA GAGCCAGACA CCACTGGGCA CAACCTCCAT ATGTGGCACA
  GGGCTTTTTC TCAAACCCCA CTGCTCCTCC CACTCCTCCA CATGAGGCAT GTGCTTGACC
  ACTGAGCCAG GAAAGCTCTT CATGTTACAA CTGGTGTACT TTTGTCAGTA AAAAACAAAG
  Y
  AGTGTGAGTC ACAGCCTTAG GAGAGAAGCT CACATGTCTT TCAAACTTTG AAGCCAAACA
  TTAAAATTTG GGTGTGATTT AGTTGATTCA GGCTTTTATA AAAACTTAAA TTGAATCAAG
  TTAAAAGACA GTCTTCTCAT AAGCCATTTT TTTTTTTTGC CCAGTATTCC ACTATAATTC
  TTCCTTTTAT ATTTATCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712794	WI_WGS_15_3107122	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306849					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3310976 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	within coordinates
Selenop	selenoprotein P	984 bp downstream
Tssr130406	transcription start site region 130406	1993 bp downstream
Tssr130407	transcription start site region 130407	1957 bp downstream
Tssr130408	transcription start site region 130408	1927 bp downstream
Tssr130409	transcription start site region 130409	1910 bp downstream
Tssr130410	transcription start site region 130410	1884 bp downstream
Tssr130411	transcription start site region 130411	1836 bp downstream
Tssr130412	transcription start site region 130412	1755 bp downstream
Tssr130413	transcription start site region 130413	1517 bp downstream
Tssr130414	transcription start site region 130414	1463 bp downstream
Tssr130415	transcription start site region 130415	1386 bp downstream
Tssr130416	transcription start site region 130416	1096 bp downstream
Tssr133567	transcription start site region 133567	1919 bp upstream
Tssr133568	transcription start site region 133568	1792 bp upstream