rs6306965 SNP Detail

Summary

• ID
  rs6306965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3311048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCACAGG GCTTTTTCTC
  AAACCCCACT GCTCCTCCCA CTCCTCCACA TGAGGCATGT GCTTGACCAC TGAGCCAGGA
  AAGCTCTTCA TGTTACAACT GGTGTACTTT TGTCAGTAAA AAACAAAGCA GTGTGAGTCA
  CAGCCTTAGG AGAGAAGCTC ACATGTCTTT CAAACTTTGA AGCCAAACAT TAAAATTTGG
  R
  TGTGATTTAG TTGATTCAGG CTTTTATAAA AACTTAAATT GAATCAAGTT AAAAGACAGT
  CTTCTCATAA GCCATTTTTT TTTTTTGCCC AGTATTCCAC TATAATTCTT CCTTTTATAT
  TTATCTTAGC ATGTCCTCTG AGAAAACTAG AATAAGTTTT CCATGAGCTT GTGTTCTGTC
  TTAAGGAGAG AATGGATAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8712910	WI_WGS_15_3107194	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6306965					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3311048 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	within coordinates
Selenop	selenoprotein P	1056 bp downstream
Tssr130408	transcription start site region 130408	1999 bp downstream
Tssr130409	transcription start site region 130409	1982 bp downstream
Tssr130410	transcription start site region 130410	1956 bp downstream
Tssr130411	transcription start site region 130411	1908 bp downstream
Tssr130412	transcription start site region 130412	1827 bp downstream
Tssr130413	transcription start site region 130413	1589 bp downstream
Tssr130414	transcription start site region 130414	1535 bp downstream
Tssr130415	transcription start site region 130415	1458 bp downstream
Tssr130416	transcription start site region 130416	1168 bp downstream
Tssr133567	transcription start site region 133567	1991 bp upstream
Tssr133568	transcription start site region 133568	1864 bp upstream