rs6306966 SNP Detail

Summary

• ID
  rs6306966
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTTAGTTA AGATACCAGT CCTTGAACTT AAAACTTAGA
  AGAGGGGAGC TTGGGAGGGT TGAATAATAG GAAATCCAGT TCGCACTGTT GGTCAAAATA
  M
  AAAACCTCCT TTCTAGGCAC CTATTTGCTA CCTGCCTCTA ATAGCTGATC TACTTCGAAG
  TGAAAAGTGC ATTCTCGTTG GCGCCGTGGC TTAGCTGGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8712911	WI_WGS_11_69691488	WI	MOUSE	f	SNP			A		C
ss37167850	NES08491052	PERLEGEN	MM_PANEL2	f	SNP	A	A		C		A	A		C	A	A		A
ss323727513	CHEV_11_68923887	CHEVERUD	SCREENING_POP	f	SNP								A				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6306966					SNP	A	A	A	C	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167850	NES08491052	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	474 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	534 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	80 bp upstream
Per1	period circadian clock 1	425 bp downstream
Rr402659	regulatory region 402659	187 bp upstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	187 bp proximal
Rr449877	regulatory region 449877	1597 bp proximal