rs6307058 SNP Detail

Summary

• ID
  rs6307058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG GGAACCCTCA AAAGGACCTG
  R
  CGCCAGCCTC CCGCTGCAGG AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8713003	WI_WGS_4_143654036	WI	MOUSE	f	SNP							A	G
ss37804707	NES09104366	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		A	G	G		A	G	G	G		A
ss45699571	mCV24938565	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	A
ss148000242	ENSMUSSNP5083977	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss321418877	CHEV_4_147662831	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6307058					SNP	A	A	G	A	G	A	A	G	A	G	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804707	NES09104366	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	within coordinates
Disp3	dispatched RND transporter family member 3	757 bp upstream
Gm68159	predicted gene, 68159	within coordinates
Tssr44603	transcription start site region 44603	768 bp upstream