rs6307127 SNP Detail

Summary

• ID
  rs6307127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74695837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACAGAGT CTCCCTGTAT
  AGCCCAGGCT ATCCTGGAAC TCACTATGTA GACCAGGGTG ACTTGTCTCT GCCTACCAAG
  TGCCACTATG CCCAATACTA ATAATTTTTT AAACAAAGAG AACGCATCCT TTATATATTA
  AATTTTTCTT TTGTTGGTTG TTAAAATTTC GACGAATTGA CAATTGTGGT TCAGTCAAAC
  Y
  CGTGCGGGAT GCTGGCCTTC AGGATTTTAA AATAGACTAG TGGAGGGAGA AAGGCAACAG
  GGACAGAAAA GAACAATGGT GTAGCAAAGG GAACTGGGGA GTGGGAGGAA GGTTGGGGGA
  AGGGAACTTC AAAGAAGACC AGAAGCCCCA GAGAAAGCCA CTCTTGAGAA GCTAAGCTAG
  AATCCTTGGG GTGGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	PWD/PhJ
ss8713072	WI_WGS_5_73853539	WI	MOUSE	f	SNP	C		T
ss51157132	NES13841828	PERLEGEN	MM_PANEL2	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	PWD/PhJ
rs6307127					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51157132	NES13841828	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74695837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	133 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	273 bp upstream
Rr399136	regulatory region 399136	24 bp upstream
Rr613306	regulatory region 613306	within coordinates
Rr613307	regulatory region 613307	316 bp proximal
Tssr46674	transcription start site region 46674	290 bp upstream
Tssr46675	transcription start site region 46675	359 bp upstream
Tssr46676	transcription start site region 46676	465 bp upstream