rs6307144 SNP Detail

Summary

• ID
  rs6307144
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGCTC CCCGCCCACG
  ACTTTCCCTA GGTGCACGTG GAGGCTGGAG GTCTTTCTTG CGGTGCGATG AGGCCGCCGC
  ACGGCAGAAG AGACTAGAAG ATGACCGCGG TAACGCTGGG TGCCCTTGCA GGGTCTTTCG
  GCAAAGATAG ACCCCAGAAC GCGAACCAGG CTGGCCTACA CACCCTACGC CCCTATGGCC
  W
  CTTCCAGTCC TCTGTCCTTG CCAGGGTCCG CAAGACACTC CGCCTCCACA ATAACGGAGA
  GAGGGGGAAA AAAATCCTTC ACTTTCAGCC CCCTTGATTG TCTAGTGGGA GGTGCTGGAG
  AGATAGACCG TGTTGTGTCC TGAGGACATT GTGACAGTGG GAGGGACTTC AAAAGCATAA
  ATAACTGATT TTTGTGATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8713089	WI_WGS_2_27729913	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6307144					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317402 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11368	CpG island 11368			within coordinates
Rr553546	regulatory region 553546			368 bp distal
Rr553547	regulatory region 553547			578 bp distal
Rr553548	regulatory region 553548			within coordinates
Rr553549	regulatory region 553549			897 bp proximal
Tssr23213	transcription start site region 23213			855 bp upstream
Tssr23214	transcription start site region 23214			827 bp upstream
Tssr23215	transcription start site region 23215			777 bp upstream
Tssr23216	transcription start site region 23216			329 bp upstream
Vav2	vav 2 oncogene			mRNA-UTR
				Noncoding-Transcript-Variant