rs6307151 SNP Detail

Summary

• ID
  rs6307151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43801590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCGCCTC TCAACTCCGG
  TCAGCTTGCA TGCCCCCCAG TCTTTATTGC TGAGTGCAAG TTTGTGTCCA GCTTATAATT
  TGCCAGCAAG ACAAGTTAGC TGCTACTGAA AAGTGATTAA TTATTTTCTA CCTGATGGGC
  CACCTCTATC ATGGGTGTTG CTAAGCTGAA TCTAAGCATT ACTCATGGAC TCAATTTGAT
  Y
  TGTCATGGAA TGCCCAGATT TTATAATAAT CTTACGACTT CTAAAACTGA AAGTAGTTCA
  TTATGAGCAT TGATGTCCTA TATACTTCCT TCTCCTAAAT TACTGTTCAG TCTTTTTGAT
  ATATAAAGGA TAATCTCACC TTTGGTACTT ATACGTACAT ACATATATGC ACACACATAT
  GTATATATAT GTACATGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8713096	WI_WGS_16_43816235	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6307151					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43801590 () rs orientation: forward

Symbol	Name	Function Class
4930552F14Rik	RIKEN cDNA 4930552F14 gene	within coordinates
Cpgi8279	CpG island 8279	932 bp distal
Gm46552	predicted gene, 46552	within coordinates
Gramd1c	GRAM domain containing 1C	within coordinates
Rr516233	regulatory region 516233	1575 bp distal
Rr516234	regulatory region 516234	946 bp distal
Tssr141154	transcription start site region 141154	1402 bp upstream
Tssr141155	transcription start site region 141155	952 bp upstream
Zdhhc23	zinc finger, DHHC domain containing 23	1436 bp upstream