rs6307346 SNP Detail

Summary

• ID
  rs6307346
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81254507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTACAG TTTCTGACAG
  ATGGCCACCC AATACAGAAC TCATATGCTA TTTAGATGAA TTACATTGTT CTGGTCATGA
  ATACATCTTT TAGATGAAAA AAAAATTACC TCACATATAT ACTATTGATA GTTGCTAGCT
  CATCCTTTGT GGAGAACACT GGGGGTTTCT GGCCTGACAG AAGGTAGGGG TGGCTACAAT
  S
  GTTCATACTT ACTTGGTTTT GTTGTCTCTT GTCTGTGAGG GTTGACTATT CTTTGGGGAA
  CTTGCTAGAT CTGAGATGTA TCGTTGTTTT AAGAACAACA ACATGATTTT AGCTTCCTGG
  GAAGCTAGTG AGCTGATACT GTTAGAAAAT GAGGAGCTTA GACCAAAGGA TGACGCCTGT
  CATTCCGGGA TTCTGATTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8713292	WI_WGS_17_80229494	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6307346					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81254507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	1830 bp distal
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	401 bp distal
Gm65830	predicted gene, 65830	1929 bp upstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates