rs6307427 SNP Detail

Summary

• ID
  rs6307427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA ACTGTGGAGG CCGGAGTCAT
  Y
  TCAGTCTGGG GCCCTTCAGC AGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8713373	WI_WGS_11_55389301	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6307427					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801731 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	518 bp downstream
Tnip1	TNFAIP3 interacting protein 1	within coordinates
Tssr3502	transcription start site region 3502	1261 bp upstream
Tssr3503	transcription start site region 3503	789 bp downstream
Tssr101565	transcription start site region 101565	1838 bp downstream
Tssr101566	transcription start site region 101566	1792 bp downstream
Tssr101567	transcription start site region 101567	1429 bp downstream
Tssr101568	transcription start site region 101568	1355 bp downstream
Tssr101569	transcription start site region 101569	1272 bp downstream
Tssr101570	transcription start site region 101570	1221 bp downstream
Tssr101571	transcription start site region 101571	1145 bp downstream
Tssr101572	transcription start site region 101572	1101 bp downstream
Tssr101573	transcription start site region 101573	1074 bp downstream
Tssr101574	transcription start site region 101574	1049 bp downstream
Tssr101575	transcription start site region 101575	1002 bp downstream
Tssr101576	transcription start site region 101576	981 bp downstream
Tssr101577	transcription start site region 101577	959 bp downstream
Tssr101578	transcription start site region 101578	874 bp downstream
Tssr108010	transcription start site region 108010	1834 bp upstream
Tssr108011	transcription start site region 108011	1218 bp upstream
Tssr108012	transcription start site region 108012	1137 bp upstream
Tssr108013	transcription start site region 108013	1117 bp upstream
Tssr108014	transcription start site region 108014	1102 bp upstream
Tssr108015	transcription start site region 108015	1021 bp upstream
Tssr108016	transcription start site region 108016	959 bp upstream
Tssr108017	transcription start site region 108017	918 bp upstream
Tssr108018	transcription start site region 108018	897 bp upstream
Tssr108019	transcription start site region 108019	828 bp upstream
Tssr108020	transcription start site region 108020	809 bp upstream
Tssr108021	transcription start site region 108021	792 bp upstream
Tssr108022	transcription start site region 108022	749 bp upstream
Tssr108023	transcription start site region 108023	525 bp upstream