rs6307457 SNP Detail

Summary

• ID
  rs6307457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGGTTGA ATAATAGGAA ATCCAGTTCG CACTGTTGGT
  CAAAATAAAA AACCTCCTTT CTAGGCACCT ATTTGCTACC TGCCTCTAAT AGCTGATCTA
  Y
  TTCGAAGTGA AAAGTGCATT CTCGTTGGCG CCGTGGCTTA GCTGGTTAAA GCGCCTGTCT
  AGTAAACAGG AGATCCTGGG TTCGAATCCC AGCGGTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8713403	WI_WGS_11_69691541	WI	MOUSE	f	SNP					C		T
ss37167848	NES08491054	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C			C	C		C	C	T		C
ss132349049	ENSMUSSNP2864372	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323727516	CHEV_11_68923940	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6307457					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167848	NES08491054	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	421 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	481 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	27 bp upstream
Per1	period circadian clock 1	478 bp downstream
Rr402659	regulatory region 402659	134 bp upstream