rs6307570 SNP Detail

Summary

• ID
  rs6307570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC ACCCAGATGA TTATGACACG
  R
  ACCAGGAAGA TAAGCATGTA AGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8713516	WI_WGS_4_143654104	WI	MOUSE	f	SNP							A	G
ss37804706	NES09104367	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	G	A		G	A	A	A		A
ss45726948	mCV24938566	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss148000248	ENSMUSSNP3133990	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss321418878	CHEV_4_147662899	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6307570					SNP	A	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804706	NES09104367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	8 bp distal
Disp3	dispatched RND transporter family member 3	825 bp upstream
Gm68159	predicted gene, 68159	within coordinates
Rr604639	regulatory region 604639	836 bp distal
Rr604640	regulatory region 604640	513 bp distal
Rr604641	regulatory region 604641	615 bp distal
Rr604642	regulatory region 604642	within coordinates
Rr604643	regulatory region 604643	472 bp distal
Rr604644	regulatory region 604644	337 bp distal
Rr604645	regulatory region 604645	192 bp distal
Tssr44603	transcription start site region 44603	836 bp upstream