rs6307813 SNP Detail

Summary

• ID
  rs6307813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81254564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTACATT GTTCTGGTCA
  TGAATACATC TTTTAGATGA AAAAAAAATT ACCTCACATA TATACTATTG ATAGTTGCTA
  GCTCATCCTT TGTGGAGAAC ACTGGGGGTT TCTGGCCTGA CAGAAGGTAG GGGTGGCTAC
  AATCGTTCAT ACTTACTTGG TTTTGTTGTC TCTTGTCTGT GAGGGTTGAC TATTCTTTGG
  R
  GAACTTGCTA GATCTGAGAT GTATCGTTGT TTTAAGAACA ACAACATGAT TTTAGCTTCC
  TGGGAAGCTA GTGAGCTGAT ACTGTTAGAA AATGAGGAGC TTAGACCAAA GGATGACGCC
  TGTCATTCCG GGATTCTGAT TTGTTGTTGG TTGTTGGGGA GAAGATGAGA AGCGCCTCTG
  GTACTAACAA CAGCAGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8713761	WI_WGS_17_80229551	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6307813					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81254564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	1887 bp distal
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	458 bp distal
Gm65830	predicted gene, 65830	1986 bp upstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates