rs6307857 SNP Detail

Summary

• ID
  rs6307857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81254590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTTTAG ATGAAAAAAA
  AATTACCTCA CATATATACT ATTGATAGTT GCTAGCTCAT CCTTTGTGGA GAACACTGGG
  GGTTTCTGGC CTGACAGAAG GTAGGGGTGG CTACAATCGT TCATACTTAC TTGGTTTTGT
  TGTCTCTTGT CTGTGAGGGT TGACTATTCT TTGGGGAACT TGCTAGATCT GAGATGTATC
  R
  TTGTTTTAAG AACAACAACA TGATTTTAGC TTCCTGGGAA GCTAGTGAGC TGATACTGTT
  AGAAAATGAG GAGCTTAGAC CAAAGGATGA CGCCTGTCAT TCCGGGATTC TGATTTGTTG
  TTGGTTGTTG GGGAGAAGAT GAGAAGCGCC TCTGGTACTA ACAACAGCAG TTTGCTACTG
  ACCCACGTTA GGCTGGACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8713805	WI_WGS_17_80229577	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6307857					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81254590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	1913 bp distal
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	484 bp distal
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates