rs6308006 SNP Detail

Summary

• ID
  rs6308006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90853855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAATCCC CTCCGCTCCC
  TGCCTCCAAG ACGGTAATGT GTTCTCTGCT CCCACAAATG CACTTGTGTG TCAGAGTCAA
  TCGTAACGCT TACAGGACAA TGAAGGGACT AGCACCTCAC ATTTTACTGT TATCTGAATG
  GATCTGCCTC TATCTCACAA CAAATTTTAT GAATCGGTTT CCTCAAGTTT ATTGTGAGGC
  Y
  CCAAACTAAG CACTATCTAA GCACTGAAAC ATACACTGTA GTGGGAACAT GAGAAGCACT
  TACAGAGTAA CTGGGGAAAG ACGCTGCCTA GGCATATGAC AGACGAGCTG TCCCCTCTCA
  GGGCTTAGAG GGAAACAAGC ATTGTAGCAG AAGCCTTCGG ATTTCATTTT GGCAAAAACT
  ATTGCAGTTT CTCCTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8713954	WI_WGS_16_91723554	WI	MOUSE	f	SNP							C		T
ss48329924	NES12186983	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6308006					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48329924	NES12186983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90853855 () rs orientation: forward

Symbol	Name	Function Class
4931406G06Rik	RIKEN cDNA 4931406G06 gene	290 bp downstream
Cpgi8437	CpG island 8437	110 bp distal
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr328102	regulatory region 328102	within coordinates
Tssr4953	transcription start site region 4953	535 bp upstream
Tssr139330	transcription start site region 139330	388 bp downstream
Tssr139331	transcription start site region 139331	192 bp downstream
Tssr142065	transcription start site region 142065	546 bp upstream
Tssr142066	transcription start site region 142066	507 bp upstream
Tssr142067	transcription start site region 142067	454 bp upstream