rs6308025 SNP Detail

Summary

• ID
  rs6308025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55147658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT GAACTTTCAA CAGGGTACAA
  Y
  AAGAGCAAAG GGGATGGATG TTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss8713973	WI_WGS_6_55573131	WI	MOUSE	f	SNP			C	T
ss45976328	mCV24062628	ABI	CRAMUS_MOUSE	f	SNP	C	C		T	C
ss133207721	ENSMUSSNP6175965	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss321805432	CHEV_6_55120667	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs6308025					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55147658 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136024	regulatory region 136024	858 bp distal
Rr136025	regulatory region 136025	943 bp proximal
Rr144444	regulatory region 144444	51 bp distal
Rr144445	regulatory region 144445	946 bp proximal