rs6308086 SNP Detail

Summary

• ID
  rs6308086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT CCGTAACTCC TCACAGAGGG
  R
  CAAGGAGCAG GGGGCTCGGG GCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8714034	WI_WGS_11_55389470	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6308086					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801900 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	687 bp downstream
Tnip1	TNFAIP3 interacting protein 1	within coordinates
Tssr3502	transcription start site region 3502	1430 bp upstream
Tssr3503	transcription start site region 3503	958 bp downstream
Tssr101566	transcription start site region 101566	1961 bp downstream
Tssr101567	transcription start site region 101567	1598 bp downstream
Tssr101568	transcription start site region 101568	1524 bp downstream
Tssr101569	transcription start site region 101569	1441 bp downstream
Tssr101570	transcription start site region 101570	1390 bp downstream
Tssr101571	transcription start site region 101571	1314 bp downstream
Tssr101572	transcription start site region 101572	1270 bp downstream
Tssr101573	transcription start site region 101573	1243 bp downstream
Tssr101574	transcription start site region 101574	1218 bp downstream
Tssr101575	transcription start site region 101575	1171 bp downstream
Tssr101576	transcription start site region 101576	1150 bp downstream
Tssr101577	transcription start site region 101577	1128 bp downstream
Tssr101578	transcription start site region 101578	1043 bp downstream
Tssr108011	transcription start site region 108011	1387 bp upstream
Tssr108012	transcription start site region 108012	1306 bp upstream
Tssr108013	transcription start site region 108013	1286 bp upstream
Tssr108014	transcription start site region 108014	1271 bp upstream
Tssr108015	transcription start site region 108015	1190 bp upstream
Tssr108016	transcription start site region 108016	1128 bp upstream
Tssr108017	transcription start site region 108017	1087 bp upstream
Tssr108018	transcription start site region 108018	1066 bp upstream
Tssr108019	transcription start site region 108019	997 bp upstream
Tssr108020	transcription start site region 108020	978 bp upstream
Tssr108021	transcription start site region 108021	961 bp upstream
Tssr108022	transcription start site region 108022	918 bp upstream
Tssr108023	transcription start site region 108023	694 bp upstream