rs6308089 SNP Detail

Summary

• ID
  rs6308089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGTCTAG TAAACAGGAG ATCCTGGGTT CGAATCCCAG
  CGGTGCCTGG TTTATGTGGG AAGTGATATA TTATTGCTGG ATTATTGACA TCTAGCTGCC
  R
  CCTTGCCTAA ATATACTCTT AATGCCAGTT TTCCTATGCA CTTTTAAGAG TATACAGAGG
  CAAACCTCTG ATTCTTAAGA CCCTGCTGCT CAAACCTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss8714037	WI_WGS_11_69691694	WI	MOUSE	f	SNP						G	A
ss37167845	NES08491029	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G				G		G	G	G	A
ss132349057	ENSMUSSNP2446240	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss323727517	CHEV_11_68924093	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs6308089					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167845	NES08491029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	268 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	328 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	53 bp downstream
Per1	period circadian clock 1	631 bp downstream
Rr402659	regulatory region 402659	within coordinates
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	within coordinates
Rr449877	regulatory region 449877	1391 bp proximal