rs6308243 SNP Detail

Summary

• ID
  rs6308243
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74696040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGATGC TGGCCTTCAG
  GATTTTAAAA TAGACTAGTG GAGGGAGAAA GGCAACAGGG ACAGAAAAGA ACAATGGTGT
  AGCAAAGGGA ACTGGGGAGT GGGAGGAAGG TTGGGGGAAG GGAACTTCAA AGAAGACCAG
  AAGCCCCAGA GAAAGCCACT CTTGAGAAGC TAAGCTAGAA TCCTTGGGGT GGGGCGGGGA
  K
  GGGGAGGAGC CAATCGCGCG GCGCTTGCGC AATGAGAGGC CCAGGTGCCC GCCGCCGCGG
  AAGCGTAACC ACCTAGAGAC GCCGCGCCGC TTGGGTGCCT GCGGCGCATG CGCAGACGGA
  TCGGTCGCTG ACTCTTCAGG GTCGCCGCCT CCACCGAGGT TGGCCCCAGA TTTGAGTCTC
  GCGCTCTTCG TTCGCTTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8714191	WI_WGS_5_73853742	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6308243					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74696040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	within coordinates
Fip1l1	factor interacting with PAPOLA and CPSF1	70 bp upstream
Rr399136	regulatory region 399136	within coordinates
Rr613306	regulatory region 613306	within coordinates
Rr613307	regulatory region 613307	113 bp proximal
Tssr46674	transcription start site region 46674	87 bp upstream
Tssr46675	transcription start site region 46675	156 bp upstream
Tssr46676	transcription start site region 46676	262 bp upstream