rs6308269 SNP Detail

Summary

• ID
  rs6308269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:43801803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGATTTT ATAATAATCT
  TACGACTTCT AAAACTGAAA GTAGTTCATT ATGAGCATTG ATGTCCTATA TACTTCCTTC
  TCCTAAATTA CTGTTCAGTC TTTTTGATAT ATAAAGGATA ATCTCACCTT TGGTACTTAT
  ACGTACATAC ATATATGCAC ACACATATGT ATATATATGT ACATGTATAT ATGTGTGTAT
  R
  TATATACATA TATATCCCTT CATTCAGATA CAACATGGCC AATGACTCTT TCGGACATAC
  AAAAGGTCTG ACCATTGGCC TTGAGGCCAA GTCAAGGAAG GCACTGTAAA ATTTAAAGAT
  ACAAGCCTGG AATGTATGCA CTTGGAAAAC GATCCTTTAA GGTGATAAAT GATTGAGGGG
  TTTCTTCTTA CCTTTTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8714217	WI_WGS_16_43816449	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6308269					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43801803 () rs orientation: forward

Symbol	Name	Function Class
4930552F14Rik	RIKEN cDNA 4930552F14 gene	within coordinates
Cpgi8279	CpG island 8279	1145 bp distal
Gm46552	predicted gene, 46552	within coordinates
Gramd1c	GRAM domain containing 1C	mRNA-UTR
Rr516233	regulatory region 516233	1788 bp distal
Rr516234	regulatory region 516234	1159 bp distal
Tssr141154	transcription start site region 141154	1615 bp upstream
Tssr141155	transcription start site region 141155	1165 bp upstream
Zdhhc23	zinc finger, DHHC domain containing 23	1649 bp upstream