rs6308378 SNP Detail

Summary

• ID
  rs6308378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCATAGT ACTCTGAAGA
  TGGAGGATGG AAAGTTTGAA GCCAGGCTGC TGGGAAATAC AGCAAGTTCC AGGCTAGCCT
  ATCCTACCTG GAAAGACCTG ACTCAAAAAA AAAAAAAAAA AAAAAAAAAA AACCAACAAC
  AAAATCCACC TTTTCCTAGA ATTTGGAAAT TTCCATCTCT AGAGCACTAA GATGAAGTAG
  K
  GATTTTGAAA GGGATGGAGT GACTGGATAA TTGGAGCACA GGGAGTCAAA TGGAGGGGAG
  GGTCATGTGA GTGAGCCAGG TACCTTAGTT TTCCATTCCA TTTGTAAAAG GAAATTCTCC
  ATGGCTCAGT GTCTATCTTT ATTTAAATAA GGGGTGCAGT GTGTGTGTTA GTTGATAATG
  GCGCACTCTG TGCAGATATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8714326	WI_WGS_1_131563518	WI	MOUSE	f	SNP							T		G
ss49673607	NES12996637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		G		T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6308378					SNP	T	T	T	T	T	T	T	G	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673607	NES12996637	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660455 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Gm70818	predicted gene, 70818			1843 bp downstream
Rr417949	regulatory region 417949			732 bp distal
Rr417950	regulatory region 417950			98 bp distal
Rr417951	regulatory region 417951			14 bp proximal
Rr417952	regulatory region 417952			1101 bp proximal
Tssr8565	transcription start site region 8565			727 bp downstream
Tssr8566	transcription start site region 8566			666 bp downstream
Tssr8567	transcription start site region 8567			617 bp downstream
Tssr8568	transcription start site region 8568			583 bp downstream
Tssr13523	transcription start site region 13523			96 bp upstream
Tssr13524	transcription start site region 13524			1132 bp downstream