rs6308561 SNP Detail

Summary

• ID
  rs6308561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACGG CACATGCACA TGAGTTGGGT
  R
  TGGTCTCTGG AGAGCCTGGA ACCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8714510	WI_WGS_11_55389545	WI	MOUSE	f	SNP							A		G
ss37206229	NES08441295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6308561					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37206229	NES08441295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801975 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	762 bp downstream
Tnip1	TNFAIP3 interacting protein 1	within coordinates
Tssr3502	transcription start site region 3502	1505 bp upstream
Tssr3503	transcription start site region 3503	1033 bp downstream
Tssr101567	transcription start site region 101567	1673 bp downstream
Tssr101568	transcription start site region 101568	1599 bp downstream
Tssr101569	transcription start site region 101569	1516 bp downstream
Tssr101570	transcription start site region 101570	1465 bp downstream
Tssr101571	transcription start site region 101571	1389 bp downstream
Tssr101572	transcription start site region 101572	1345 bp downstream
Tssr101573	transcription start site region 101573	1318 bp downstream
Tssr101574	transcription start site region 101574	1293 bp downstream
Tssr101575	transcription start site region 101575	1246 bp downstream
Tssr101576	transcription start site region 101576	1225 bp downstream
Tssr101577	transcription start site region 101577	1203 bp downstream
Tssr101578	transcription start site region 101578	1118 bp downstream
Tssr108011	transcription start site region 108011	1462 bp upstream
Tssr108012	transcription start site region 108012	1381 bp upstream
Tssr108013	transcription start site region 108013	1361 bp upstream
Tssr108014	transcription start site region 108014	1346 bp upstream
Tssr108015	transcription start site region 108015	1265 bp upstream
Tssr108016	transcription start site region 108016	1203 bp upstream
Tssr108017	transcription start site region 108017	1162 bp upstream
Tssr108018	transcription start site region 108018	1141 bp upstream
Tssr108019	transcription start site region 108019	1072 bp upstream
Tssr108020	transcription start site region 108020	1053 bp upstream
Tssr108021	transcription start site region 108021	1036 bp upstream
Tssr108022	transcription start site region 108022	993 bp upstream
Tssr108023	transcription start site region 108023	769 bp upstream