rs6308605 SNP Detail

Summary

• ID
  rs6308605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAAGTGAAAA
  GTGCATTCTC GTTggcgccg tggcttagct ggttaaagcg cctgtctagt aaacaggaga
  tcctgggttc gaatcccagc ggtgcctGGT TTATGTGGGA AGTGATATAT TATTGCTGGA
  TTATTGACAT CTAGCTGCCN CCTTGCCTAA ATATACTCTT AATGCCAGTT TTCCTATGCA
  CTTTTAAGAG TATNCAGAGG CAAACCTCTG ATTCTTAAGA CCCTGCTGCT CAAACCTAGG
  R
  AAGACTGTCA TACGGAATGT ACTAGTTTTA TATTAGGGTT TCACTGTGGC TCCTTGAGAA
  GAGAGCCACG GGAAGACGTT GCTGCTCAAG AAAAGGCCTC GACCTGGCAC TCTAGGTGTA
  GCGCACGCTT TTNaaaaaaa aaaaaaaaaa aaaGGAACGG TGAAATCCGC AGGGGTCGAG
  GGCCTTGATG GCCAGCTATA GCTCCACAGG CCAAGGGCCG CACGCGGCTG TGATGGCCGA
  GTGGTTAAGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8714554	WI_WGS_11_69691795	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6308605					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	167 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	227 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	154 bp downstream
Per1	period circadian clock 1	732 bp downstream
Rr402659	regulatory region 402659	within coordinates
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	99 bp distal
Rr449877	regulatory region 449877	1290 bp proximal