rs6308682 SNP Detail

Summary

• ID
  rs6308682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAAAGAG GAAACCTAGG GGCCTGGGAA ATGGCTTAGC
  AGGTGTTTGC TGCCAAGCCT GACAACCGGA GTTCAGTCTC CAGGGCAAAC TCACTTCTGC
  R
  AGCTGTCTTC TGACTTCCAC TCGTGCCCTG TGGTACACAT GCACATCCCC TCCAAACACA
  CATGCCATAC ATACATACAT ACGTACATAC ATACATACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss8714631	WI_WGS_4_143654346	WI	MOUSE	f	SNP			A	G
ss148000256	ENSMUSSNP5403244	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321418879	CHEV_4_147663141	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs6308682					SNP	A	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	250 bp distal
Disp3	dispatched RND transporter family member 3	1067 bp upstream
Gm68159	predicted gene, 68159	108 bp downstream
Rr604639	regulatory region 604639	1078 bp distal
Rr604640	regulatory region 604640	755 bp distal
Rr604641	regulatory region 604641	857 bp distal
Rr604642	regulatory region 604642	198 bp distal
Rr604643	regulatory region 604643	714 bp distal
Rr604644	regulatory region 604644	579 bp distal
Rr604645	regulatory region 604645	434 bp distal
Tssr44603	transcription start site region 44603	1078 bp upstream