rs6308988 SNP Detail

Summary

• ID
  rs6308988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90854001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT TAGAGGGAAA CAAGCATTGT
  R
  GCAGAAGCCT TCGGATTTCA TTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8714938	WI_WGS_16_91723700	WI	MOUSE	f	SNP								A	G
ss48329919	NES12186989	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A			G	A	A	G	A	A	G	A
ss148549319	ENSMUSSNP4245119	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6308988					SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48329919	NES12186989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90854001 () rs orientation: forward

Symbol	Name	Function Class
4931406G06Rik	RIKEN cDNA 4931406G06 gene	436 bp downstream
Cpgi8437	CpG island 8437	256 bp distal
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr328102	regulatory region 328102	within coordinates
Tssr4953	transcription start site region 4953	681 bp upstream
Tssr139330	transcription start site region 139330	534 bp downstream
Tssr139331	transcription start site region 139331	338 bp downstream
Tssr142065	transcription start site region 142065	692 bp upstream
Tssr142066	transcription start site region 142066	653 bp upstream
Tssr142067	transcription start site region 142067	600 bp upstream