rs6309222 SNP Detail

Summary

• ID
  rs6309222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCACTTC TGCGAGCTGT CTTCTGACTT CCACTCGTGC
  CCTGTGGTAC ACATGCACAT CCCCTCCAAA CACACATGCC ATACATACAT ACATACGTAC
  R
  TACATACATA CATACATACA TAGTTTTAAT TAAGAGGGCA GTTTGGGAGT TCTCTGAACC
  CCTCTCACTT TGGGGTTCTA CAGGAAAATC CTGTACCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss8715172	WI_WGS_4_143654433	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs6309222					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	337 bp distal
Disp3	dispatched RND transporter family member 3	1154 bp upstream
Gm68159	predicted gene, 68159	195 bp downstream
Rr604639	regulatory region 604639	1165 bp distal
Rr604640	regulatory region 604640	842 bp distal
Rr604641	regulatory region 604641	944 bp distal
Rr604642	regulatory region 604642	285 bp distal
Rr604643	regulatory region 604643	801 bp distal
Rr604644	regulatory region 604644	666 bp distal
Rr604645	regulatory region 604645	521 bp distal
Rr604646	regulatory region 604646	1999 bp proximal
Tssr44603	transcription start site region 44603	1165 bp upstream