rs6309241 SNP Detail

Summary

• ID
  rs6309241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88432751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTTCCC CTCTCCATCC
  GGACAGTGGA ATGAATGCCA GTCAAGGCAT AAGGCTATGT AAGAAAAGAT GATGCCCCAG
  TCCTAACTCC AAGAGCCTTG GCTGATTCAA GTATGTTCTC TTGCCAAGGA TACTTAAATG
  GTTGCAAATG ACCTAGAAGG CAATCATCTG CCTAAAATAA ACTCTGAGAT GATGCAGCCC
  Y
  GGGAGCTGCA TCAACATTTT TCAGGGAAGA TTTGCTGACC TAATACAGCA GGCCTGGGAT
  TTAGCTCTGA CTGAGCTCCT TAGCATGGCC TTTAGCGAGT CCTCAGTCAA GACCAACTCT
  CCAAAACCAG ATGGCCAGAG TGGTACTCAT TCTGAGAGAG GCAGGGAGGC TCTAAAGAGT
  CTTGAGGATT CAAGCAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715191	WI_WGS_11_89208847	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309241					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88432751 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	1457 bp upstream
Tssr110018	transcription start site region 110018	279 bp upstream