rs6309564 SNP Detail

Summary

• ID
  rs6309564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176538230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAGGAAA ACATGCTGAG
  AAGAAAATCA GAAGAGAAGG AAACATTACA GGAAAGTAGG CAAAGTTAAT GCCCAACACT
  AGGATAAAAG TTGTCAGTAG TCTGAAATTC AAATGTAAGC AGGCATCCTG TGTTGTTCAC
  CCAGGCTAAC AACCTGCAGA GACCCCTCTC TGGGTACACC TTCAAGCCCT GTCCTGTTCC
  Y
  TCCCAGCACT GTCCTGGAGA GGGACTGAGA AGGCAGTGTT ACGCAAACAG TCATCTAAAA
  GGGAGATGAT TTCTGTCACC GTTTGAAACA AGCTTAGGGT TATTGTTTCC ACTCCAACCT
  GCAATTGGTG CTCCTGTTCA TTATAAAGAA GTGTGGGGCT GTGTTCCCCT TTGTATAGTC
  TAAACATACA TTTGAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715514	WI_WGS_1_178029155	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309564					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176538230 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1901 bp upstream
Rr423899	regulatory region 423899	1823 bp proximal
Rr423900	regulatory region 423900	1912 bp proximal